IL_7OOD_121

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAA*UGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OOD_121 not in the Motif Atlas

Homologous match to IL_9DFE_074

Geometric discrepancy: 0.2347

The information below is about IL_9DFE_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

UAA/GAN with extra stack

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7OOD|1|3|U|1858
7OOD|1|3|U|1859
7OOD|1|3|A|1860
7OOD|1|3|A|1861
7OOD|1|3|A|1862
*
7OOD|1|3|U|1894
7OOD|1|3|G|1895
7OOD|1|3|A|1896
7OOD|1|3|A|1897
7OOD|1|3|G|1898

Current chains

Chain 3

23S ribosomal RNA

Nearby chains