IL_7OPE_047

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7OPE|1|A|U|1251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OPE_047 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1194

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

7OPE|1|A|C|1248
7OPE|1|A|U|1249
7OPE|1|A|G|1250
7OPE|1|A|U|1251
7OPE|1|A|G|1252
7OPE|1|A|A|1253
7OPE|1|A|A|1254
7OPE|1|A|G|1255
*
7OPE|1|A|U|1274
7OPE|1|A|G|1275
7OPE|1|A|G|1276
7OPE|1|A|A|1277
7OPE|1|A|G|1278

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L20