IL_7OPE_056

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAUG*CUAG

Length

9 nucleotides

Bulged bases

7OPE|1|A|U|1466

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OPE_056 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.3164

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7OPE|1|A|C|1463
7OPE|1|A|A|1464
7OPE|1|A|A|1465
7OPE|1|A|U|1466
7OPE|1|A|G|1467
*
7OPE|1|A|C|1625
7OPE|1|A|U|1626
7OPE|1|A|A|1627
7OPE|1|A|G|1628

Current chains

Chain A

23S rRNA

Nearby chains