IL_7OPE_060

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*UGAUG

Length

9 nucleotides

Bulged bases

7OPE|1|A|U|1570

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OPE_060 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.2188

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7OPE|1|A|C|1515
7OPE|1|A|A|1516
7OPE|1|A|A|1517
7OPE|1|A|G|1518
*
7OPE|1|A|U|1567
7OPE|1|A|G|1568
7OPE|1|A|A|1569
7OPE|1|A|U|1570
7OPE|1|A|G|1571

Current chains

Chain A

23S rRNA

Nearby chains