IL_7OPE_076

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAG*UGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OPE_076 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1764

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

7OPE|1|A|U|1880
7OPE|1|A|U|1881
7OPE|1|A|A|1882
7OPE|1|A|A|1883
7OPE|1|A|G|1884
*
7OPE|1|A|U|1916
7OPE|1|A|G|1917
7OPE|1|A|A|1918
7OPE|1|A|A|1919
7OPE|1|A|G|1920

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2