IL_7OPE_077

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OPE_077 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1691

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7OPE|1|A|A|1885
7OPE|1|A|G|1886
7OPE|1|A|G|1887
7OPE|1|A|A|1888
7OPE|1|A|G|1889
*
7OPE|1|A|C|1911
7OPE|1|A|G|1912
7OPE|1|A|A|1913
7OPE|1|A|A|1914
7OPE|1|A|U|1915

Current chains

Chain A

23S rRNA

Nearby chains