IL_7OPE_084

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7OPE|1|A|A|2468

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OPE_084 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.0987

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

7OPE|1|A|G|2099
7OPE|1|A|A|2100
*
7OPE|1|A|U|2467
7OPE|1|A|A|2468
7OPE|1|A|C|2469
7OPE|1|A|C|2470

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain E

50S ribosomal protein L2