IL_7OPE_105

3D structure

PDB id

7OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

7OPE|1|A|A|2794

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OPE_105 not in the Motif Atlas

Homologous match to IL_4WF9_104

Geometric discrepancy: 0.0971

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7OPE|1|A|G|2766
7OPE|1|A|A|2767
7OPE|1|A|U|2768
7OPE|1|A|A|2769
7OPE|1|A|A|2770
7OPE|1|A|G|2771
*
7OPE|1|A|U|2791
7OPE|1|A|G|2792
7OPE|1|A|A|2793
7OPE|1|A|A|2794
7OPE|1|A|G|2795
7OPE|1|A|C|2796

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6

Chain N

50S ribosomal protein L13

Chain j

50S ribosomal protein L36