IL_7OSA_017

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCC*GUGC

Length

7 nucleotides

Bulged bases

7OSA|1|18S|U|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_017 not in the Motif Atlas

Geometric match to IL_4PDQ_004

Geometric discrepancy: 0.3097

The information below is about IL_4PDQ_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7OSA|1|18S|G|274
7OSA|1|18S|C|275
7OSA|1|18S|C|276
*
7OSA|1|18S|G|279
7OSA|1|18S|U|280
7OSA|1|18S|G|281
7OSA|1|18S|C|282

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS6

40S ribosomal protein S6