IL_7OSA_061
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 7OSA|1|18S|C|1274, 7OSA|1|18S|U|1432, 7OSA|1|18S|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OSA_061 not in the Motif Atlas
- Geometric match to IL_4V88_510
- Geometric discrepancy: 0.1118
- The information below is about IL_4V88_510
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62984.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
7OSA|1|18S|U|1272
7OSA|1|18S|G|1273
7OSA|1|18S|C|1274
7OSA|1|18S|A|1275
7OSA|1|18S|U|1276
7OSA|1|18S|G|1277
7OSA|1|18S|G|1278
*
7OSA|1|18S|U|1430
7OSA|1|18S|C|1431
7OSA|1|18S|U|1432
7OSA|1|18S|G|1433
7OSA|1|18S|U|1434
7OSA|1|18S|G|1435
7OSA|1|18S|A|1436
7OSA|1|18S|U|1437
7OSA|1|18S|G|1438
Current chains
- Chain 18S
- 18S rRNA
Nearby chains
- Chain eS10
- 40S ribosomal protein S10-A
- Chain uS10
- 40S ribosomal protein S20
- Chain uS14
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain uS3
- BJ4_G0045400.mRNA.1.CDS.1
Coloring options: