3D structure

PDB id
7OSA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CG*CAG
Length
5 nucleotides
Bulged bases
7OSA|1|18S|A|1427
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSA_062 not in the Motif Atlas
Homologous match to IL_8C3A_458
Geometric discrepancy: 0.1246
The information below is about IL_8C3A_458
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
112

Unit IDs

7OSA|1|18S|C|1280
7OSA|1|18S|G|1281
*
7OSA|1|18S|C|1426
7OSA|1|18S|A|1427
7OSA|1|18S|G|1428

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain uS10
40S ribosomal protein S20
Chain uS14
HLJ1_G0030400.mRNA.1.CDS.1
Chain uS3
BJ4_G0045400.mRNA.1.CDS.1
Chain uS5
40S ribosomal protein S2
Chain uS9
BJ4_G0008010.mRNA.1.CDS.1

Coloring options:


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