IL_7OSA_078

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_078 not in the Motif Atlas

Homologous match to IL_8P9A_457

Geometric discrepancy: 0.1024

The information below is about IL_8P9A_457

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7OSA|1|18S|C|1653
7OSA|1|18S|G|1654
7OSA|1|18S|A|1655
7OSA|1|18S|U|1656
*
7OSA|1|18S|A|1744
7OSA|1|18S|G|1745
7OSA|1|18S|A|1746
7OSA|1|18S|G|1747

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain 25S

Large subunit ribosomal RNA; LSU rRNA

Chain eL41

eL41

Chain uL14

60S ribosomal protein L23-B