IL_7OSA_079

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

7OSA|1|18S|U|1657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_079 not in the Motif Atlas

Homologous match to IL_8P9A_458

Geometric discrepancy: 0.1711

The information below is about IL_8P9A_458

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7OSA|1|18S|U|1656
7OSA|1|18S|U|1657
7OSA|1|18S|G|1658
*
7OSA|1|18S|U|1743
7OSA|1|18S|A|1744

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain 25S

Large subunit ribosomal RNA; LSU rRNA

Chain eL41

eL41

Chain uL14

60S ribosomal protein L23-B

Chain uS12

40S ribosomal protein S23