IL_7OSA_088

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_088 not in the Motif Atlas

Homologous match to IL_8P9A_233

Geometric discrepancy: 0.1468

The information below is about IL_8P9A_233

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

7OSA|1|25S|C|27
7OSA|1|25S|C|28
*
7OSA|1|25S|G|56
7OSA|1|25S|A|57
7OSA|1|25S|G|58

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain 58S

5.8S ribosomal RNA; 5.8S rRNA

Chain eL13

60S ribosomal protein L13

Chain eL15

60S ribosomal protein L15-A

Chain eL37

Ribosomal protein L37

Chain uL29

BJ4_G0044250.mRNA.1.CDS.1