IL_7OSA_104

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

7OSA|1|25S|U|534, 7OSA|1|25S|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_104 not in the Motif Atlas

Homologous match to IL_8P9A_248

Geometric discrepancy: 0.1262

The information below is about IL_8P9A_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43858.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7OSA|1|25S|G|531
7OSA|1|25S|A|532
7OSA|1|25S|A|533
7OSA|1|25S|U|534
7OSA|1|25S|G|535
7OSA|1|25S|U|536
7OSA|1|25S|A|537
7OSA|1|25S|G|538
*
7OSA|1|25S|U|553
7OSA|1|25S|A|554
7OSA|1|25S|U|555
7OSA|1|25S|U|556
7OSA|1|25S|A|557
7OSA|1|25S|U|558
7OSA|1|25S|A|559
7OSA|1|25S|G|560
7OSA|1|25S|C|561

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL14

60S ribosomal protein L14-A

Chain eL20

60S ribosomal protein L20