3D structure

PDB id
7OSA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUUUG*CAUAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSA_106 not in the Motif Atlas
Homologous match to IL_8P9A_250
Geometric discrepancy: 0.1
The information below is about IL_8P9A_250
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74367.1
Basepair signature
cWW-L-R-L-R-L-R-cWW
Number of instances in this motif group
2

Unit IDs

7OSA|1|25S|G|680
7OSA|1|25S|U|681
7OSA|1|25S|U|682
7OSA|1|25S|U|683
7OSA|1|25S|G|684
*
7OSA|1|25S|C|696
7OSA|1|25S|A|697
7OSA|1|25S|U|698
7OSA|1|25S|A|699
7OSA|1|25S|C|700

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain eL13
60S ribosomal protein L13
Chain eL15
60S ribosomal protein L15-A
Chain uL15
60S ribosomal protein L28
Chain uL4
BJ4_G0008850.mRNA.1.CDS.1

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1025 s