3D structure

PDB id
7OSA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UGAAG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSA_115 not in the Motif Atlas
Homologous match to IL_8P9A_258
Geometric discrepancy: 0.0631
The information below is about IL_8P9A_258
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_50730.2
Basepair signature
cWW-tSH-tHS-tHS-cWW
Number of instances in this motif group
19

Unit IDs

7OSA|1|25S|U|834
7OSA|1|25S|G|835
7OSA|1|25S|A|836
7OSA|1|25S|A|837
7OSA|1|25S|G|838
*
7OSA|1|25S|U|855
7OSA|1|25S|G|856
7OSA|1|25S|G|857
7OSA|1|25S|A|858
7OSA|1|25S|G|859

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain eL19
60S ribosomal protein L19-A
Chain eL43
60S ribosomal protein L43-A
Chain uL2
60S ribosomal protein L2-B

Coloring options:


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