IL_7OSA_115

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_115 not in the Motif Atlas

Homologous match to IL_8P9A_258

Geometric discrepancy: 0.0631

The information below is about IL_8P9A_258

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

7OSA|1|25S|U|834
7OSA|1|25S|G|835
7OSA|1|25S|A|836
7OSA|1|25S|A|837
7OSA|1|25S|G|838
*
7OSA|1|25S|U|855
7OSA|1|25S|G|856
7OSA|1|25S|G|857
7OSA|1|25S|A|858
7OSA|1|25S|G|859

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL19

60S ribosomal protein L19-A

Chain eL43

60S ribosomal protein L43-A

Chain uL2

60S ribosomal protein L2-B