IL_7OSA_123
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OSA_123 not in the Motif Atlas
- Homologous match to IL_8P9A_266
- Geometric discrepancy: 0.0698
- The information below is about IL_8P9A_266
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
7OSA|1|25S|G|991
7OSA|1|25S|A|992
7OSA|1|25S|G|993
7OSA|1|25S|G|994
7OSA|1|25S|U|995
7OSA|1|25S|A|996
7OSA|1|25S|A|997
*
7OSA|1|25S|U|1052
7OSA|1|25S|A|1053
7OSA|1|25S|A|1054
7OSA|1|25S|A|1055
7OSA|1|25S|U|1056
7OSA|1|25S|A|1057
7OSA|1|25S|U|1058
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain AB
- 5S ribosomal RNA; 5S rRNA
- Chain eL20
- 60S ribosomal protein L20
- Chain eL21
- BJ4_G0003770.mRNA.1.CDS.1
- Chain uL16
- 60S ribosomal protein L10
- Chain uL30
- 60S ribosomal protein L7-A
Coloring options: