IL_7OSA_139

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7OSA|1|25S|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_139 not in the Motif Atlas

Homologous match to IL_8P9A_284

Geometric discrepancy: 0.0894

The information below is about IL_8P9A_284

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

7OSA|1|25S|G|1262
7OSA|1|25S|A|1263
7OSA|1|25S|G|1264
7OSA|1|25S|U|1265
7OSA|1|25S|G|1266
*
7OSA|1|25S|C|1275
7OSA|1|25S|U|1276
7OSA|1|25S|C|1277

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain uL10

60S acidic ribosomal protein P0

Chain uL11

60S ribosomal protein L12-B