IL_7OSA_167

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

7OSA|1|25S|C|2197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_167 not in the Motif Atlas

Homologous match to IL_8P9A_312

Geometric discrepancy: 0.1021

The information below is about IL_8P9A_312

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7OSA|1|25S|C|2196
7OSA|1|25S|C|2197
7OSA|1|25S|A|2198
7OSA|1|25S|G|2199
*
7OSA|1|25S|C|2245
7OSA|1|25S|G|2246

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain 18S

Small subunit ribosomal RNA; SSU rRNA

Chain uL2

60S ribosomal protein L2-B