IL_7OSA_197

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

7OSA|1|25S|A|3142, 7OSA|1|25S|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_197 not in the Motif Atlas

Homologous match to IL_8P9A_342

Geometric discrepancy: 0.0614

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7OSA|1|25S|C|3004
7OSA|1|25S|A|3005
7OSA|1|25S|A|3006
7OSA|1|25S|U|3007
*
7OSA|1|25S|A|3139
7OSA|1|25S|G|3140
7OSA|1|25S|A|3141
7OSA|1|25S|A|3142
7OSA|1|25S|C|3143
7OSA|1|25S|G|3144

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain uL13

60S ribosomal protein L16-A

Chain uL3

60S ribosomal protein L3