IL_7OSA_248

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_248 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.0556

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

7OSA|1|25S|G|1898
7OSA|1|25S|G|1899
7OSA|1|25S|A|1900
7OSA|1|25S|A|1901
7OSA|1|25S|G|1902
7OSA|1|25S|U|1903
7OSA|1|25S|C|1904
7OSA|1|25S|G|1905
7OSA|1|25S|G|1906
*
7OSA|1|25S|C|2333
7OSA|1|25S|U|2334
7OSA|1|25S|G|2335
7OSA|1|25S|U|2336
7OSA|1|25S|C|2337

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain uL14

60S ribosomal protein L23-B

Chain uL3

60S ribosomal protein L3