IL_7OSA_252

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

7OSA|1|18S|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSA_252 not in the Motif Atlas

Homologous match to IL_8P9A_386

Geometric discrepancy: 0.2902

The information below is about IL_8P9A_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

20

Unit IDs

7OSA|1|18S|G|204
7OSA|1|18S|U|205
7OSA|1|18S|A|206
*
7OSA|1|18S|U|259
7OSA|1|18S|U|260
7OSA|1|18S|U|261
7OSA|1|18S|U|262
7OSA|1|18S|C|263

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS4

40S ribosomal protein S4

Chain eS8

40S ribosomal protein S8