3D structure

PDB id
7OSA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
CCAAU*AG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSA_254 not in the Motif Atlas
Homologous match to IL_8P9A_397
Geometric discrepancy: 0.0626
The information below is about IL_8P9A_397
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_03109.3
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
6

Unit IDs

7OSA|1|18S|C|443
7OSA|1|18S|C|444
7OSA|1|18S|A|445
7OSA|1|18S|A|446
7OSA|1|18S|U|447
*
7OSA|1|18S|A|460
7OSA|1|18S|G|461

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eS24
40S ribosomal protein S24
Chain eS4
40S ribosomal protein S4
Chain uS4
BJ4_G0026100.mRNA.1.CDS.1

Coloring options:


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