IL_7OSM_006

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUAAG*CUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_006 not in the Motif Atlas

Homologous match to IL_4V88_389

Geometric discrepancy: 0.1507

The information below is about IL_4V88_389

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61299.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

7OSM|1|18S|U|58
7OSM|1|18S|C|59
7OSM|1|18S|U|60
7OSM|1|18S|A|61
7OSM|1|18S|A|62
7OSM|1|18S|G|63
*
7OSM|1|18S|C|87
7OSM|1|18S|U|88
7OSM|1|18S|G|89

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS24

40S ribosomal protein S24

Chain eS4

40S ribosomal protein S4

Chain eS6

40S ribosomal protein S6