3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AAU*AU
Length
5 nucleotides
Bulged bases
7OSM|1|18S|A|266
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_015 not in the Motif Atlas
Homologous match to IL_4V88_399
Geometric discrepancy: 0.1616
The information below is about IL_4V88_399
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

7OSM|1|18S|A|265
7OSM|1|18S|A|266
7OSM|1|18S|U|267
*
7OSM|1|18S|A|288
7OSM|1|18S|U|289

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eS4
40S ribosomal protein S4
Chain eS6
40S ribosomal protein S6

Coloring options:


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