IL_7OSM_018

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

7OSM|1|18S|U|320, 7OSM|1|18S|C|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_018 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2653

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7OSM|1|18S|U|318
7OSM|1|18S|U|319
7OSM|1|18S|U|320
7OSM|1|18S|C|321
7OSM|1|18S|G|322
7OSM|1|18S|A|323
*
7OSM|1|18S|U|345
7OSM|1|18S|G|346

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain 25S

Large subunit ribosomal RNA; LSU rRNA

Chain eS8

40S ribosomal protein S8

Chain uS17

40S ribosomal protein S11-B