3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UUA*UA
Length
5 nucleotides
Bulged bases
7OSM|1|18S|U|440
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_022 not in the Motif Atlas
Homologous match to IL_4V88_407
Geometric discrepancy: 0.1051
The information below is about IL_4V88_407
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_83039.19
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

7OSM|1|18S|U|439
7OSM|1|18S|U|440
7OSM|1|18S|A|441
*
7OSM|1|18S|U|463
7OSM|1|18S|A|464

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eEF2
Elongation factor 2
Chain eS24
40S ribosomal protein S24
Chain eS4
40S ribosomal protein S4
Chain uS4
BJ4_G0026100.mRNA.1.CDS.1

Coloring options:


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