3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AAAAAUU*AUAU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_038 not in the Motif Atlas
Homologous match to IL_8C3A_433
Geometric discrepancy: 0.1649
The information below is about IL_8C3A_433
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_83023.1
Basepair signature
cWW-R-L-R-L-R-L-L-L-L
Number of instances in this motif group
1

Unit IDs

7OSM|1|18S|A|753
7OSM|1|18S|A|754
7OSM|1|18S|A|755
7OSM|1|18S|A|756
7OSM|1|18S|A|757
7OSM|1|18S|U|758
7OSM|1|18S|U|759
*
7OSM|1|18S|A|791
7OSM|1|18S|U|792
7OSM|1|18S|A|793
7OSM|1|18S|U|794

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eS4
40S ribosomal protein S4
Chain uS17
40S ribosomal protein S11-B
Chain uS4
BJ4_G0026100.mRNA.1.CDS.1
Chain uS8
40S ribosomal protein S22-A

Coloring options:


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