IL_7OSM_040

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_040 not in the Motif Atlas

Homologous match to IL_4V88_428

Geometric discrepancy: 0.1101

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

7OSM|1|18S|A|865
7OSM|1|18S|G|866
*
7OSM|1|18S|C|962
7OSM|1|18S|A|963
7OSM|1|18S|U|964
7OSM|1|18S|U|965

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS27

40S ribosomal protein S27-A

Chain uS15

40S ribosomal protein S13

Chain uS8

40S ribosomal protein S22-A