IL_7OSM_041

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7OSM|1|18S|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_041 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.0952

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7OSM|1|18S|G|867
7OSM|1|18S|G|868
7OSM|1|18S|A|869
7OSM|1|18S|C|870
*
7OSM|1|18S|G|957
7OSM|1|18S|U|958
7OSM|1|18S|U|959
7OSM|1|18S|U|960
7OSM|1|18S|U|961

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS27

40S ribosomal protein S27-A

Chain uS15

40S ribosomal protein S13