IL_7OSM_053

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

7OSM|1|18S|A|1631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_053 not in the Motif Atlas

Homologous match to IL_4V88_441

Geometric discrepancy: 0.1253

The information below is about IL_4V88_441

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7OSM|1|18S|G|1146
7OSM|1|18S|A|1147
*
7OSM|1|18S|U|1630
7OSM|1|18S|A|1631
7OSM|1|18S|C|1632

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eL41

eL41

Chain eS26

40S ribosomal protein S26

Chain uS5

40S ribosomal protein S2