IL_7OSM_054

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

7OSM|1|18S|G|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_054 not in the Motif Atlas

Homologous match to IL_4V88_442

Geometric discrepancy: 0.1295

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7OSM|1|18S|G|1149
7OSM|1|18S|G|1150
7OSM|1|18S|A|1151
*
7OSM|1|18S|U|1627
7OSM|1|18S|U|1628

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS26

40S ribosomal protein S26

Chain mRNA

MRNA