IL_7OSM_055

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

7OSM|1|18S|C|1158, 7OSM|1|18S|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_055 not in the Motif Atlas

Geometric match to IL_1KOG_007

Geometric discrepancy: 0.1559

The information below is about IL_1KOG_007

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

7OSM|1|18S|A|1157
7OSM|1|18S|C|1158
7OSM|1|18S|C|1159
7OSM|1|18S|A|1160
*
7OSM|1|18S|U|1617
7OSM|1|18S|C|1618
7OSM|1|18S|C|1619
7OSM|1|18S|C|1620
7OSM|1|18S|U|1621

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain PSIT

Transfer RNA; tRNA

Chain eS28

eS28

Chain uS10

40S ribosomal protein S20

Chain uS7

Rps5p

Chain uS9

BJ4_G0008010.mRNA.1.CDS.1