IL_7OSM_057

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGG*CACG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_057 not in the Motif Atlas

Geometric match to IL_4V88_470

Geometric discrepancy: 0.3519

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7OSM|1|18S|C|1177
7OSM|1|18S|G|1178
7OSM|1|18S|G|1179
*
7OSM|1|18S|C|1459
7OSM|1|18S|A|1460
7OSM|1|18S|C|1461
7OSM|1|18S|G|1462

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain ASIT

Transfer RNA; tRNA

Chain PSIT

Transfer RNA; tRNA

Chain uS13

40S ribosomal protein S18-B

Chain uS19

40S ribosomal protein S15