IL_7OSM_060

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGG*CCC

Length

7 nucleotides

Bulged bases

7OSM|1|18S|U|1269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_060 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.2704

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

7OSM|1|18S|G|1268
7OSM|1|18S|U|1269
7OSM|1|18S|G|1270
7OSM|1|18S|G|1271
*
7OSM|1|18S|C|1439
7OSM|1|18S|C|1440
7OSM|1|18S|C|1441

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eEF2

Elongation factor 2

Chain uS14

HLJ1_G0030400.mRNA.1.CDS.1

Chain uS3

BJ4_G0045400.mRNA.1.CDS.1