IL_7OSM_061
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGCAUGGC*GUCUGUGAUG
- Length
- 18 nucleotides
- Bulged bases
- 7OSM|1|18S|C|1274, 7OSM|1|18S|U|1432, 7OSM|1|18S|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OSM_061 not in the Motif Atlas
- Geometric match to IL_8C3A_505
- Geometric discrepancy: 0.2448
- The information below is about IL_8C3A_505
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06463.1
- Basepair signature
- cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
7OSM|1|18S|U|1272
7OSM|1|18S|G|1273
7OSM|1|18S|C|1274
7OSM|1|18S|A|1275
7OSM|1|18S|U|1276
7OSM|1|18S|G|1277
7OSM|1|18S|G|1278
7OSM|1|18S|C|1279
*
7OSM|1|18S|G|1429
7OSM|1|18S|U|1430
7OSM|1|18S|C|1431
7OSM|1|18S|U|1432
7OSM|1|18S|G|1433
7OSM|1|18S|U|1434
7OSM|1|18S|G|1435
7OSM|1|18S|A|1436
7OSM|1|18S|U|1437
7OSM|1|18S|G|1438
Current chains
- Chain 18S
- 18S rRNA
Nearby chains
- Chain ASIT
- Transfer RNA; tRNA
- Chain eEF2
- Elongation factor 2
- Chain eS10
- 40S ribosomal protein S10-A
- Chain mRNA
- MRNA
- Chain uS10
- 40S ribosomal protein S20
- Chain uS14
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain uS3
- BJ4_G0045400.mRNA.1.CDS.1
Coloring options: