IL_7OSM_062
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CCG*CAGG
- Length
- 7 nucleotides
- Bulged bases
- 7OSM|1|18S|A|1427
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OSM_062 not in the Motif Atlas
- Geometric match to IL_5TBW_079
- Geometric discrepancy: 0.2506
- The information below is about IL_5TBW_079
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
7OSM|1|18S|C|1279
7OSM|1|18S|C|1280
7OSM|1|18S|G|1281
*
7OSM|1|18S|C|1426
7OSM|1|18S|A|1427
7OSM|1|18S|G|1428
7OSM|1|18S|G|1429
Current chains
- Chain 18S
- 18S rRNA
Nearby chains
- Chain ASIT
- Transfer RNA; tRNA
- Chain mRNA
- MRNA
- Chain uS10
- 40S ribosomal protein S20
- Chain uS14
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain uS3
- BJ4_G0045400.mRNA.1.CDS.1
- Chain uS5
- 40S ribosomal protein S2
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