IL_7OSM_064

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_064 not in the Motif Atlas

Geometric match to IL_4V88_388

Geometric discrepancy: 0.2434

The information below is about IL_4V88_388

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7OSM|1|18S|C|1306
7OSM|1|18S|U|1307
7OSM|1|18S|G|1308
*
7OSM|1|18S|C|1317
7OSM|1|18S|G|1318

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS17

BJ4_G0020710.mRNA.1.CDS.1

Chain eS26

40S ribosomal protein S26