3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUCUAAC*GUAAUC
Length
13 nucleotides
Bulged bases
7OSM|1|18S|A|1516
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OSM_069 not in the Motif Atlas
Homologous match to IL_4V88_460
Geometric discrepancy: 0.2962
The information below is about IL_4V88_460
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_77092.1
Basepair signature
cWW-L-R-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

7OSM|1|18S|G|1488
7OSM|1|18S|U|1489
7OSM|1|18S|C|1490
7OSM|1|18S|U|1491
7OSM|1|18S|A|1492
7OSM|1|18S|A|1493
7OSM|1|18S|C|1494
*
7OSM|1|18S|G|1513
7OSM|1|18S|U|1514
7OSM|1|18S|A|1515
7OSM|1|18S|A|1516
7OSM|1|18S|U|1517
7OSM|1|18S|C|1518

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eS19
40S ribosomal protein S19-A
Chain uS10
40S ribosomal protein S20
Chain uS14
HLJ1_G0030400.mRNA.1.CDS.1
Chain uS3
BJ4_G0045400.mRNA.1.CDS.1

Coloring options:


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