IL_7OSM_075

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

7OSM|1|18S|A|1756

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_075 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3709

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7OSM|1|18S|C|1644
7OSM|1|18S|G|1645
7OSM|1|18S|C|1646
7OSM|1|18S|U|1647
*
7OSM|1|18S|A|1753
7OSM|1|18S|A|1754
7OSM|1|18S|A|1755
7OSM|1|18S|A|1756
7OSM|1|18S|G|1757

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain 25S

Large subunit ribosomal RNA; LSU rRNA

Chain eEF2

Elongation factor 2

Chain eL41

eL41

Chain mRNA

MRNA

Chain uS12

40S ribosomal protein S23