IL_7OSM_087
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 7OSM|1|25S|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OSM_087 not in the Motif Atlas
- Geometric match to IL_5TBW_005
- Geometric discrepancy: 0.0624
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7OSM|1|25S|C|31
7OSM|1|25S|U|32
7OSM|1|25S|G|33
7OSM|1|25S|A|34
7OSM|1|25S|A|35
7OSM|1|25S|C|36
7OSM|1|25S|U|37
7OSM|1|25S|U|38
*
7OSM|1|25S|A|45
7OSM|1|25S|U|46
7OSM|1|25S|C|47
7OSM|1|25S|A|48
7OSM|1|25S|A|49
7OSM|1|25S|U|50
7OSM|1|25S|A|51
7OSM|1|25S|A|52
7OSM|1|25S|G|53
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain eL13
- 60S ribosomal protein L13
- Chain eL15
- 60S ribosomal protein L15-A
- Chain eL37
- Ribosomal protein L37
- Chain eL42
- BJ4_G0001880.mRNA.1.CDS.1
- Chain uL15
- 60S ribosomal protein L28
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