IL_7OSM_095

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

7OSM|1|25S|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_095 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.1246

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7OSM|1|25S|G|337
7OSM|1|25S|A|338
7OSM|1|25S|C|339
*
7OSM|1|58S|G|25
7OSM|1|58S|U|26

Current chains

Chain 25S

25S rRNA

Chain 58S

5.8S rRNA

Nearby chains

Chain uL24

60S ribosomal protein L26-A

Chain uL4

BJ4_G0008850.mRNA.1.CDS.1