IL_7OSM_103

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_103 not in the Motif Atlas

Homologous match to IL_8C3A_023

Geometric discrepancy: 0.0774

The information below is about IL_8C3A_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7OSM|1|25S|G|668
7OSM|1|25S|U|669
7OSM|1|25S|C|670
*
7OSM|1|25S|G|792
7OSM|1|25S|C|793
7OSM|1|25S|U|794

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL13

60S ribosomal protein L13

Chain eL18

BJ4_G0033900.mRNA.1.CDS.1

Chain uL15

60S ribosomal protein L28

Chain uL4

BJ4_G0008850.mRNA.1.CDS.1