IL_7OSM_107

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

7OSM|1|25S|U|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_107 not in the Motif Atlas

Homologous match to IL_5TBW_025

Geometric discrepancy: 0.2001

The information below is about IL_5TBW_025

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7OSM|1|25S|A|755
7OSM|1|25S|U|756
*
7OSM|1|25S|A|775
7OSM|1|25S|U|776
7OSM|1|25S|U|777

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL18

BJ4_G0033900.mRNA.1.CDS.1

Chain eL29

60S ribosomal protein L29