IL_7OSM_108

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_108 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1614

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7OSM|1|25S|C|758
7OSM|1|25S|U|759
7OSM|1|25S|G|760
7OSM|1|25S|A|761
7OSM|1|25S|U|762
7OSM|1|25S|G|763
*
7OSM|1|25S|C|768
7OSM|1|25S|G|769
7OSM|1|25S|G|770
7OSM|1|25S|A|771
7OSM|1|25S|U|772
7OSM|1|25S|G|773

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL13

60S ribosomal protein L13

Chain eL42

BJ4_G0001880.mRNA.1.CDS.1

Chain uL15

60S ribosomal protein L28