IL_7OSM_111

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

7OSM|1|25S|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_111 not in the Motif Atlas

Geometric match to IL_4V9F_025

Geometric discrepancy: 0.193

The information below is about IL_4V9F_025

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7OSM|1|25S|A|828
7OSM|1|25S|U|829
*
7OSM|1|25S|A|895
7OSM|1|25S|A|896
7OSM|1|25S|U|897

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL34

60S ribosomal protein L34-A

Chain eL43

60S ribosomal protein L43-A

Chain uL2

60S ribosomal protein L2-B