IL_7OSM_114

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_114 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.0733

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7OSM|1|25S|G|869
7OSM|1|25S|G|870
7OSM|1|25S|U|871
7OSM|1|25S|U|872
*
7OSM|1|25S|A|888
7OSM|1|25S|U|889
7OSM|1|25S|C|890

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL37

Ribosomal protein L37

Chain uL3

60S ribosomal protein L3