IL_7OSM_121

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_121 not in the Motif Atlas

Geometric match to IL_5TBW_039

Geometric discrepancy: 0.1255

The information below is about IL_5TBW_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7OSM|1|25S|A|997
7OSM|1|25S|A|998
*
7OSM|1|25S|U|1050
7OSM|1|25S|U|1051
7OSM|1|25S|U|1052

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain eL21

BJ4_G0003770.mRNA.1.CDS.1

Chain uL16

60S ribosomal protein L10

Chain uL18

60S ribosomal protein L5