IL_7OSM_126

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUG*CGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OSM_126 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3027

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7OSM|1|25S|C|1069
7OSM|1|25S|U|1070
7OSM|1|25S|U|1071
7OSM|1|25S|G|1072
*
7OSM|1|25S|C|1086
7OSM|1|25S|G|1087
7OSM|1|25S|U|1088
7OSM|1|25S|G|1089

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL21

BJ4_G0003770.mRNA.1.CDS.1

Chain eL29

60S ribosomal protein L29